Package: JBrowseR 0.10.2

Colin Diesh

JBrowseR: An R Interface to the JBrowse 2 Genome Browser

Provides an R interface to the JBrowse 2 genome browser. Enables embedding a JB2 genome browser in a Shiny app or R Markdown document. The browser can also be launched from an interactive R console. The browser can be loaded with a variety of common genomics data types, and can be used with a custom theme.

Authors:Elliot Hershberg [aut], Colin Diesh [aut, cre], the JBrowse 2 Team [aut]

JBrowseR_0.10.2.tar.gz
JBrowseR_0.10.2.zip(r-4.5)JBrowseR_0.10.2.zip(r-4.4)JBrowseR_0.10.2.zip(r-4.3)
JBrowseR_0.10.2.tgz(r-4.4-any)JBrowseR_0.10.2.tgz(r-4.3-any)
JBrowseR_0.10.2.tar.gz(r-4.5-noble)JBrowseR_0.10.2.tar.gz(r-4.4-noble)
JBrowseR_0.10.2.tgz(r-4.4-emscripten)JBrowseR_0.10.2.tgz(r-4.3-emscripten)
JBrowseR.pdf |JBrowseR.html
JBrowseR/json (API)
NEWS

# Install 'JBrowseR' in R:
install.packages('JBrowseR', repos = c('https://gmod.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/gmod/jbrowser/issues

On CRAN:

genomicsreactjsrmarkdownshinyvisualization

7.55 score 35 stars 1 packages 28 scripts 333 downloads 16 exports 61 dependencies

Last updated 8 months agofrom:981ad613b1. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 12 2024
R-4.5-winNOTENov 12 2024
R-4.5-linuxNOTENov 12 2024
R-4.4-winNOTENov 12 2024
R-4.4-macNOTENov 12 2024
R-4.3-winNOTENov 12 2024
R-4.3-macNOTENov 12 2024

Exports:%>%assemblydefault_sessionJBrowseRJBrowseROutputjson_configrenderJBrowseRserve_datatext_indexthemetrack_alignmentstrack_data_frametrack_featuretrack_varianttrack_wiggletracks

Dependencies:askpassbase64encbitbit64bslibcachemclicliprcpp11crayondigestdplyrevaluatefansifastmapfontawesomefsgenericsgluehighrhmshtmltoolshtmlwidgetshttpuvidsjquerylibjsonliteknitrlaterlifecyclemagrittrmemoisemimeopensslpillarpkgconfigprettyunitsprogresspromisesR6rappdirsRcppreactRreadrrlangrmarkdownsassstringistringrsystibbletidyselecttinytextzdbutf8uuidvctrsvroomwithrxfunyaml

Advanced JSON tutorial

Rendered fromjson-tutorial.Rmdusingknitr::rmarkdownon Nov 12 2024.

Last update: 2023-12-20
Started: 2021-02-18

Creating URLs

Rendered fromcreating-urls.Rmdusingknitr::rmarkdownon Nov 12 2024.

Last update: 2021-02-18
Started: 2021-02-18

Custom browser tutorial

Rendered fromcustom-browser-tutorial.Rmdusingknitr::rmarkdownon Nov 12 2024.

Last update: 2023-12-20
Started: 2021-02-17

Introduction to JBrowseR

Rendered fromJBrowseR.Rmdusingknitr::rmarkdownon Nov 12 2024.

Last update: 2021-02-23
Started: 2021-02-16