{
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  "Package": "JBrowseR",
  "Title": "An R Interface to the JBrowse 2 Genome Browser",
  "Version": "0.11.0",
  "Authors@R": "c(person(given = \"Elliot\",\nfamily = \"Hershberg\",\nrole = c(\"aut\"),\nemail = \"eahershberg@gmail.com\",\ncomment = c(ORCID = \"0000-0003-2068-3366\")),\nperson(given = \"Colin\",\nfamily = \"Diesh\",\nrole = c(\"aut\", \"cre\"),\nemail = \"colin.diesh@gmail.com\",\ncomment = c(ORCID = \"0000-0003-2629-7570\")),\nperson(given = \"the JBrowse 2 Team\",\nrole = c(\"aut\")))",
  "Description": "Provides an R interface to the JBrowse 2 genome browser.\nEnables embedding a JB2 genome browser in a Shiny app or R\nMarkdown document. The browser can also be launched from an\ninteractive R console. The browser can be loaded with a variety\nof common genomics data types, and can be used with a custom\ntheme.",
  "License": "Apache License (>= 2)",
  "URL": "https://gmod.github.io/JBrowseR/ https://github.com/GMOD/JBrowseR",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
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  "Config/pak/sysreqs": "cmake make libuv1-dev",
  "Repository": "https://gmod.r-universe.dev",
  "Date/Publication": "2026-07-22 21:45:55 UTC",
  "RemoteUrl": "https://github.com/gmod/jbrowser",
  "RemoteRef": "HEAD",
  "RemoteSha": "7d3c096e8cd839e3cac448da6bfa5dd528e6c2bc",
  "NeedsCompilation": "no",
  "Packaged": {
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    "User": "root"
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  "Author": "Elliot Hershberg [aut] (ORCID: <https://orcid.org/0000-0003-2068-3366>),\nColin Diesh [aut, cre] (ORCID: <https://orcid.org/0000-0003-2629-7570>),\nthe JBrowse 2 Team [aut]",
  "Maintainer": "Colin Diesh <colin.diesh@gmail.com>",
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  "_type": "src",
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  "_created": "2026-07-24T09:11:33.000Z",
  "_published": "2026-07-24T11:25:50.993Z",
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  "_selfowned": true,
  "_usedby": 1,
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      "n": 6
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  "_topics": [
    "genomics",
    "reactjs",
    "rmarkdown",
    "shiny",
    "visualization"
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  "_stars": 40,
  "_contributors": [
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    "type": "organization",
    "name": "Generic Model Organism Database Project",
    "followers": 68
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    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/JBrowseR"
  },
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  "_pkgdown": "https://gmod.github.io/JBrowseR/",
  "_searchresults": 44,
  "_rbuild": "4.6.1",
  "_assets": [
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    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/JBrowseR.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/gmod/jbrowser",
  "_realowner": "gmod",
  "_cranurl": true,
  "_releases": [
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      "version": "0.7.0",
      "date": "2021-02-22"
    },
    {
      "version": "0.7.1",
      "date": "2021-03-27"
    },
    {
      "version": "0.8.0",
      "date": "2021-05-21"
    },
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      "date": "2021-07-07"
    },
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      "date": "2021-10-17"
    },
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      "date": "2022-07-20"
    },
    {
      "version": "0.10.0",
      "date": "2023-06-08"
    },
    {
      "version": "0.10.2",
      "date": "2023-12-20"
    }
  ],
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    "assembly",
    "dotplot_view",
    "JBrowseR",
    "JBrowseRApp",
    "JBrowseROutput",
    "linear_view",
    "renderJBrowseR",
    "synteny_track",
    "synteny_view",
    "text_index",
    "theme",
    "track",
    "track_data_frame",
    "tracks",
    "view"
  ],
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    {
      "page": "assembly",
      "title": "Describe a genome assembly from a FASTA URL",
      "topics": [
        "assembly"
      ]
    },
    {
      "page": "dotplot_view",
      "title": "Describe a dotplot view comparing two assemblies",
      "topics": [
        "dotplot_view"
      ]
    },
    {
      "page": "JBrowseR",
      "title": "Embed a JBrowse 2 linear genome view",
      "topics": [
        "JBrowseR"
      ]
    },
    {
      "page": "JBrowseR-shiny",
      "title": "Shiny bindings for JBrowseR",
      "topics": [
        "JBrowseR-shiny",
        "JBrowseROutput",
        "renderJBrowseR"
      ]
    },
    {
      "page": "JBrowseRApp",
      "title": "Embed the full JBrowse 2 app (multiple views of any type)",
      "topics": [
        "JBrowseRApp"
      ]
    },
    {
      "page": "linear_view",
      "title": "Describe a linear genome view for 'JBrowseRApp(views = ...)'",
      "topics": [
        "linear_view"
      ]
    },
    {
      "page": "synteny_track",
      "title": "Build a synteny (PAF) track config spanning two assemblies",
      "topics": [
        "synteny_track"
      ]
    },
    {
      "page": "synteny_view",
      "title": "Describe a linear synteny view comparing two (or more) assemblies",
      "topics": [
        "synteny_view"
      ]
    },
    {
      "page": "text_index",
      "title": "Describe a gene-name text-search index",
      "topics": [
        "text_index"
      ]
    },
    {
      "page": "theme",
      "title": "Build a custom color theme",
      "topics": [
        "theme"
      ]
    },
    {
      "page": "track",
      "title": "Describe a data track by its URL",
      "topics": [
        "track"
      ]
    },
    {
      "page": "track_data_frame",
      "title": "Build a track from an R data frame",
      "topics": [
        "track_data_frame"
      ]
    },
    {
      "page": "tracks",
      "title": "Collect tracks into a list for JBrowseR",
      "topics": [
        "tracks"
      ]
    },
    {
      "page": "view",
      "title": "Describe a view for 'JBrowseRApp(views = ...)'",
      "topics": [
        "view"
      ]
    }
  ],
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  "_readme": "https://github.com/gmod/jbrowser/raw/HEAD/README.md",
  "_rundeps": [
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    "bslib",
    "cachem",
    "cli",
    "digest",
    "evaluate",
    "fastmap",
    "fontawesome",
    "fs",
    "highr",
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    "htmlwidgets",
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    "mime",
    "R6",
    "rappdirs",
    "rlang",
    "rmarkdown",
    "sass",
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    "xfun",
    "yaml"
  ],
  "_vignettes": [
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      "source": "json-tutorial.Rmd",
      "filename": "json-tutorial.html",
      "title": "Advanced JSON tutorial",
      "engine": "knitr::rmarkdown",
      "headings": [
        "When to use it",
        "From a config file",
        "From an R list"
      ],
      "created": "2021-02-18 01:23:55",
      "modified": "2026-07-22 19:41:06",
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    },
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      "filename": "comparative-synteny.html",
      "title": "Comparing genomes: linear synteny and dotplots",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Describe the four assemblies",
        "One all-vs-all track between them",
        "Stack them in a synteny view",
        "The same PAF as a dotplot",
        "Building the PAF from your own genomes"
      ],
      "created": "2026-07-18 15:09:27",
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      "headings": [
        "Describe the assembly",
        "Add tracks",
        "Enable gene-name search",
        "Put it together",
        "Show results computed in R",
        "Reacting to clicks in Shiny"
      ],
      "created": "2021-02-17 21:34:04",
      "modified": "2026-07-22 18:53:36",
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      "filename": "creating-urls.html",
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        "Viewing local files"
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        "Adding tracks",
        "A gallery",
        "Where to next"
      ],
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