{
  "_id": "6a114a8bacfb0bcc41ce8697",
  "Package": "JBrowseR",
  "Title": "An R Interface to the JBrowse 2 Genome Browser",
  "Version": "0.10.2",
  "Authors@R": "c(person(given = \"Elliot\",\nfamily = \"Hershberg\",\nrole = c(\"aut\"),\nemail = \"eahershberg@gmail.com\",\ncomment = c(ORCID = \"0000-0003-2068-3366\")),\nperson(given = \"Colin\",\nfamily = \"Diesh\",\nrole = c(\"aut\", \"cre\"),\nemail = \"colin.diesh@gmail.com\",\ncomment = c(ORCID = \"0000-0003-2629-7570\")),\nperson(given = \"the JBrowse 2 Team\",\nrole = c(\"aut\")))",
  "Description": "Provides an R interface to the JBrowse 2 genome browser.\nEnables embedding a JB2 genome browser in a Shiny app or R\nMarkdown document. The browser can also be launched from an\ninteractive R console. The browser can be loaded with a variety\nof common genomics data types, and can be used with a custom\ntheme.",
  "License": "Apache License (>= 2)",
  "URL": "https://gmod.github.io/JBrowseR/ https://github.com/GMOD/JBrowseR",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.1.2",
  "Config/testthat/edition": "3",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libssl-dev\nlibx11-dev zlib1g-dev",
  "Repository": "https://gmod.r-universe.dev",
  "Date/Publication": "2024-03-12 15:55:32 UTC",
  "RemoteUrl": "https://github.com/gmod/jbrowser",
  "RemoteRef": "HEAD",
  "RemoteSha": "981ad613b14e936c57228eb3c8a05d4b11f797bf",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-23 06:31:43 UTC",
    "User": "root"
  },
  "Author": "Elliot Hershberg [aut] (ORCID: <https://orcid.org/0000-0003-2068-3366>),\nColin Diesh [aut, cre] (ORCID: <https://orcid.org/0000-0003-2629-7570>),\nthe JBrowse 2 Team [aut]",
  "Maintainer": "Colin Diesh <colin.diesh@gmail.com>",
  "MD5sum": "73e4ee29e07fc9c92de1636bfe03cbf4",
  "_user": "gmod",
  "_type": "src",
  "_file": "JBrowseR_0.10.2.tar.gz",
  "_fileid": "a9f6383cba3a56a11bc56527ac98bbb83c0f95d6613818df35ea4d9aea0bafc5",
  "_filesize": 1179278,
  "_sha256": "a9f6383cba3a56a11bc56527ac98bbb83c0f95d6613818df35ea4d9aea0bafc5",
  "_created": "2026-05-23T06:31:43.000Z",
  "_published": "2026-05-23T06:34:51.790Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77503363253,
      "time": 133,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7174961153"
    },
    {
      "job": 77503363245,
      "time": 141,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7174961896"
    },
    {
      "job": 77503363243,
      "time": 149,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7174959790"
    },
    {
      "job": 77503363241,
      "time": 133,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7174958937"
    },
    {
      "job": 77503177795,
      "time": 213,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7174947961"
    },
    {
      "job": 77503363237,
      "time": 118,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7174959744"
    },
    {
      "job": 77503363247,
      "time": 88,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7174956856"
    },
    {
      "job": 77503363244,
      "time": 71,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7174955349"
    },
    {
      "job": 77503363249,
      "time": 93,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7174957423"
    }
  ],
  "_buildurl": "https://github.com/r-universe/gmod/actions/runs/26325771918",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/gmod/jbrowser",
  "_commit": {
    "id": "981ad613b14e936c57228eb3c8a05d4b11f797bf",
    "author": "Colin Diesh <colin.diesh@gmail.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Remove babel/preset-env (#34)\n\n",
    "time": 1710258932
  },
  "_maintainer": {
    "name": "Colin Diesh",
    "email": "colin.diesh@gmail.com",
    "login": "cmdcolin",
    "description": "",
    "uuid": 6511937,
    "orcid": "0000-0003-2629-7570"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "htmltools",
      "role": "Imports"
    },
    {
      "package": "htmlwidgets",
      "role": "Imports"
    },
    {
      "package": "reactR",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "magrittr",
      "role": "Imports"
    },
    {
      "package": "readr",
      "role": "Imports"
    },
    {
      "package": "jsonlite",
      "role": "Imports"
    },
    {
      "package": "httpuv",
      "role": "Imports"
    },
    {
      "package": "mime",
      "role": "Imports"
    },
    {
      "package": "cli",
      "role": "Imports"
    },
    {
      "package": "ids",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "gmod",
  "_selfowned": true,
  "_usedby": 1,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "genomics",
    "reactjs",
    "rmarkdown",
    "shiny",
    "visualization"
  ],
  "_stars": 40,
  "_contributors": [
    {
      "user": "elliothershberg",
      "count": 236,
      "uuid": 19295181
    },
    {
      "user": "cmdcolin",
      "count": 25,
      "uuid": 6511937
    }
  ],
  "_userbio": {
    "uuid": 342482,
    "type": "organization",
    "name": "Generic Model Organism Database Project"
  },
  "_downloads": {
    "count": 296,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/JBrowseR"
  },
  "_devurl": "https://github.com/gmod/jbrowser",
  "_pkgdown": "https://gmod.github.io/JBrowseR/",
  "_searchresults": 31,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/JBrowseR.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/gmod/jbrowser",
  "_realowner": "gmod",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.7.0",
      "date": "2021-02-22"
    },
    {
      "version": "0.7.1",
      "date": "2021-03-27"
    },
    {
      "version": "0.8.0",
      "date": "2021-05-21"
    },
    {
      "version": "0.8.1",
      "date": "2021-07-07"
    },
    {
      "version": "0.9.0",
      "date": "2021-10-17"
    },
    {
      "version": "0.9.1",
      "date": "2022-07-20"
    },
    {
      "version": "0.10.0",
      "date": "2023-06-08"
    },
    {
      "version": "0.10.2",
      "date": "2023-12-20"
    }
  ],
  "_exports": [
    "%>%",
    "assembly",
    "default_session",
    "JBrowseR",
    "JBrowseROutput",
    "json_config",
    "renderJBrowseR",
    "serve_data",
    "text_index",
    "theme",
    "track_alignments",
    "track_data_frame",
    "track_feature",
    "track_variant",
    "track_wiggle",
    "tracks"
  ],
  "_help": [
    {
      "page": "assembly",
      "title": "Create an assembly for a custom JBrowse view",
      "topics": [
        "assembly"
      ]
    },
    {
      "page": "default_session",
      "title": "Create a default session for a custom JBrowse view",
      "topics": [
        "default_session"
      ]
    },
    {
      "page": "JBrowseR",
      "title": "R interface to JBrowse 2 genome browser",
      "topics": [
        "JBrowseR"
      ]
    },
    {
      "page": "JBrowseR-shiny",
      "title": "Shiny bindings for JBrowseR",
      "topics": [
        "JBrowseR-shiny",
        "JBrowseROutput",
        "JBrowseR_html",
        "renderJBrowseR"
      ]
    },
    {
      "page": "json_config",
      "title": "Read in a JBrowse 2 JSON configuration file",
      "topics": [
        "json_config"
      ]
    },
    {
      "page": "serve_data",
      "title": "Serve a local data directory for use with a browser",
      "topics": [
        "serve_data"
      ]
    },
    {
      "page": "text_index",
      "title": "Create configuration for a JBrowse 2 text index",
      "topics": [
        "text_index"
      ]
    },
    {
      "page": "theme",
      "title": "Create a theme for a custom JBrowse 2 view",
      "topics": [
        "theme"
      ]
    },
    {
      "page": "track_alignments",
      "title": "Create an AlignmentsTrack for a custom JBrowse 2 view",
      "topics": [
        "track_alignments"
      ]
    },
    {
      "page": "track_data_frame",
      "title": "Create a track from an R data frame for a custom JBrowse 2 view",
      "topics": [
        "track_data_frame"
      ]
    },
    {
      "page": "track_feature",
      "title": "Create a FeatureTrack for a custom JBrowse 2 view",
      "topics": [
        "track_feature"
      ]
    },
    {
      "page": "track_variant",
      "title": "Create a VariantTrack for a custom JBrowse 2 view",
      "topics": [
        "track_variant"
      ]
    },
    {
      "page": "track_wiggle",
      "title": "Create a WiggleTrack for a custom JBrowse 2 view",
      "topics": [
        "track_wiggle"
      ]
    },
    {
      "page": "tracks",
      "title": "Create a set of tracks for a custom JBrowse 2 view",
      "topics": [
        "tracks"
      ]
    }
  ],
  "_pkglogo": "https://github.com/gmod/jbrowser/raw/HEAD/man/figures/logo.png",
  "_readme": "https://github.com/gmod/jbrowser/raw/HEAD/README.md",
  "_rundeps": [
    "askpass",
    "base64enc",
    "bit",
    "bit64",
    "bslib",
    "cachem",
    "cli",
    "clipr",
    "cpp11",
    "crayon",
    "digest",
    "dplyr",
    "evaluate",
    "fastmap",
    "fontawesome",
    "fs",
    "generics",
    "glue",
    "highr",
    "hms",
    "htmltools",
    "htmlwidgets",
    "httpuv",
    "ids",
    "jquerylib",
    "jsonlite",
    "knitr",
    "later",
    "lifecycle",
    "magrittr",
    "memoise",
    "mime",
    "openssl",
    "otel",
    "pillar",
    "pkgconfig",
    "prettyunits",
    "progress",
    "promises",
    "R6",
    "rappdirs",
    "Rcpp",
    "reactR",
    "readr",
    "rlang",
    "rmarkdown",
    "sass",
    "stringi",
    "stringr",
    "sys",
    "tibble",
    "tidyselect",
    "tinytex",
    "tzdb",
    "utf8",
    "uuid",
    "vctrs",
    "vroom",
    "withr",
    "xfun",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "json-tutorial.Rmd",
      "filename": "json-tutorial.html",
      "title": "Advanced JSON tutorial",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Example JSON configuration",
        "Using the JsonView",
        "Resources"
      ],
      "created": "2021-02-18 01:23:55",
      "modified": "2023-12-20 17:16:41",
      "commits": 4
    },
    {
      "source": "creating-urls.Rmd",
      "filename": "creating-urls.html",
      "title": "Creating URLs",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Using local data",
        "Hosting options"
      ],
      "created": "2021-02-18 02:20:45",
      "modified": "2021-02-18 02:20:45",
      "commits": 1
    },
    {
      "source": "custom-browser-tutorial.Rmd",
      "filename": "custom-browser-tutorial.html",
      "title": "Custom browser tutorial",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Preparing an assembly",
        "Creating a minimal shiny app",
        "Adding tracks",
        "Setting a default session",
        "Creating a custom theme",
        "Putting it all together"
      ],
      "created": "2021-02-17 21:34:04",
      "modified": "2023-12-20 17:16:41",
      "commits": 8
    },
    {
      "source": "JBrowseR.Rmd",
      "filename": "JBrowseR.html",
      "title": "Introduction to JBrowseR",
      "engine": "knitr::rmarkdown",
      "headings": [
        "The main function",
        "More configuration"
      ],
      "created": "2021-02-16 21:40:06",
      "modified": "2021-02-23 23:34:14",
      "commits": 4
    }
  ],
  "_score": 6.8715729355458794,
  "_indexed": true,
  "_nocasepkg": "jbrowser",
  "_universes": [
    "gmod",
    "cmdcolin"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.10.2",
      "date": "2026-05-23T06:33:59.000Z",
      "distro": "noble",
      "commit": "981ad613b14e936c57228eb3c8a05d4b11f797bf",
      "fileid": "6429e5e5487721f038986c38e67bbe788ea286bf76710ed09c792fa7c095ade8",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/gmod/actions/runs/26325771918"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.10.2",
      "date": "2026-05-23T06:34:05.000Z",
      "distro": "noble",
      "commit": "981ad613b14e936c57228eb3c8a05d4b11f797bf",
      "fileid": "56c502fc33278a5c1499b19c7fe16507583124f325c3e13865610dc1601af443",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/gmod/actions/runs/26325771918"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.10.2",
      "date": "2026-05-23T06:33:49.000Z",
      "commit": "981ad613b14e936c57228eb3c8a05d4b11f797bf",
      "fileid": "a792b31a0f02a62439de1f4527dfec54d1f4544db65e597fb18bf47c8bd6fe73",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/gmod/actions/runs/26325771918"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.10.2",
      "date": "2026-05-23T06:33:39.000Z",
      "commit": "981ad613b14e936c57228eb3c8a05d4b11f797bf",
      "fileid": "a55a33bc49bf2cbc2e3e167c7ce0d6c601fbf1876f7687c5856ba02faa616c48",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/gmod/actions/runs/26325771918"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.10.2",
      "date": "2026-05-23T06:34:00.000Z",
      "commit": "981ad613b14e936c57228eb3c8a05d4b11f797bf",
      "fileid": "cf5dc8ee7b6498daa8e8c6eb3681e542cf84a34d07c7000b2859526c330c186d",
      "status": "success",
      "buildurl": "https://github.com/r-universe/gmod/actions/runs/26325771918"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.10.2",
      "date": "2026-05-23T06:33:08.000Z",
      "commit": "981ad613b14e936c57228eb3c8a05d4b11f797bf",
      "fileid": "ccdbcb34d4bc3a04cabc4d62a10a60aae4058ceb848600227eab8c35b69b6580",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/gmod/actions/runs/26325771918"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.10.2",
      "date": "2026-05-23T06:32:55.000Z",
      "commit": "981ad613b14e936c57228eb3c8a05d4b11f797bf",
      "fileid": "668cbdbed77fc79a7b484b42c606b4fe777a75c862cb7c547d724ef861abba35",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/gmod/actions/runs/26325771918"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.10.2",
      "date": "2026-05-23T06:33:15.000Z",
      "commit": "981ad613b14e936c57228eb3c8a05d4b11f797bf",
      "fileid": "06ee20fc313c160c45d57e21549392fe27d0f835e51ccae807eb8b2d016e6dd4",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/gmod/actions/runs/26325771918"
    }
  ]
}